PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA03g08640
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 536aa    MW: 58893.7 Da    PI: 8.9664
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA03g08640genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-057799123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++C+k F r  nL+ H r H
  CA03g08640 77 FVCEICNKGFQRDQNLQLHRRGH 99
                89*******************88 PP

2zf-C2H215.54.9e-05153175123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC +C+k +  +s+ k H++t+
  CA03g08640 153 WKCDKCSKKYAVQSDWKAHQKTC 175
                 58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.72E-87699No hitNo description
Gene3DG3DSA:3.30.160.601.8E-57699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0177799IPR015880Zinc finger, C2H2-like
PfamPF121718.6E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497799IPR007087Zinc finger, C2H2
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035577118148IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-5141174IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.72E-8148174No hitNo description
SMARTSM0035594153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 536 aa     Download sequence    Send to blast
MSNISGEEAG SFTSGEEVNL HISNNNISSI TTSNGSNSLS QQQQPLVKKK RNLPGNPDPN  60
AEVVALSPTT LMATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRTT TEVRKRVYIC  120
PEPTCVHHNP ARALGDLTGI KKHYSRKHGE KKWKCDKCSK KYAVQSDWKA HQKTCGTREY  180
KCDCGTIFSR RDSFITHRAF CDALAEENNK VNQGLMNNKV NQGLMNSMEA NIHSGQMHEL  240
MSSNASLGLS EFNNFDPKNP LKTLPQELLP IPFKSMNNSM SPGGMFSTTS GNLFGSPRSV  300
ASSSSGLQLG SNIPSNFNYL QDNGKKGVAQ GQGQFSGSSA PMSATALLQK AAQMGATASS  360
SINSPMMQKS FVTSSMAGPD TITRPSPYEN FQMQQDNNNH HPHQQQTNLA AVMNDMGIYS  420
GILMNNDQNN GGFIKNVTEL DRENNSTNDN SSHVMGIRNQ TVLGQNGNDM LTVDFLGVGG  480
TSRPQISNLQ EQQRLEEAIN QQRMQAAAAS MNPFHHQQNI NSQGNSALEK PIWDV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-159HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016565721.10.0PREDICTED: protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-113IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLK4CV550.0K4CV55_SOLLC; Uncharacterized protein
STRINGSolyc09g074780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-103indeterminate(ID)-domain 2